How do I stop the fungus?

I agree. Maybe a weapon similar to the flamethrower that works much like the regular one, except it is loaded with the anti fungal liquid(?) and creates a 3x3 tile aoe made of anti fungal gas. The gas could then be spreading like smoke or toxic clouds and where it touches the fungus, it reverts to the original state, thereby removing fungal beds and killing other fungus creatures. It would then just dissipate.