I recall merging something to deal with this a while back. That said, I’m also not particularly concerned, as you can turn the chargen points and the -vantage caps (separately) up to 1,000 if you so choose. For some reason points people manage to glitch are (somehow) More Usable than points they just ask for.
So as Kevin put it, congrats on breaking the game, hope you like playing with the pieces.